Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Gonad
Cell type
Ovary
MeSH Description
The reproductive organ (GONADS) in female animals. In vertebrates, the ovary contains two functional parts: the OVARIAN FOLLICLE for the production of female germ cells (OOGENESIS); and the endocrine cells (GRANULOSA CELLS; THECA CELLS; and LUTEAL CELLS) for the production of ESTROGENS and PROGESTERONE.

Attributes by original data submitter

Sample

sex
female
tissue
ovary
lab
Michael Snyder, Stanford
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
30666719
Reads aligned (%)
97.0
Duplicates removed (%)
9.3
Number of peaks
19549 (qval < 1E-05)

hg19

Number of total reads
30666719
Reads aligned (%)
96.1
Duplicates removed (%)
9.6
Number of peaks
18822 (qval < 1E-05)

Base call quality data from DBCLS SRA